simulate the Newtonian equations of motion for systems with hundreds to millions of particles. GROMACS is a versatile package to perform molecular dynamics, i.e.
Metastats: Detect Differentially Abundant Features Statistical Analysis of Metagenomic ProfileĪn algorithm for taxonomic binning of metagenomic sequences ArtigoĭiScRIBinATE is a similarity based binning method.Ī high-performance computational pipeline for metagenomic data analysis Ótimo framework com várias ferramentas online, como ORF_finder e fragGeneScan The greengenes web application provides access to the current and comprehensive 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading.Įstimating Bacterial Composition from Metagenomic Sequences (linux) WebCARMA is a web-based system for the functional and taxonomic analysis of metagenomic DNA sequences.Ī High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic DataĬommunity Cyberinfrastructure for Advanced Microbial Ecology Research & Analysis
The GEBA project is aimed at systematically filling in the gaps in sequencing along the bacterial and archaeal branches of the tree of life. GenDB is a genome annotation system for prokaryotic genomes. Based on a set of predicted and automatically annotated ORFs (a genome or metagenome) it acts as a window into these preprocessed data which does not only allow to view the initial results but also facilitates improved annotation and in-depth data analysis.
CODONCODE ALIGNER MANUAL SOFTWARE
JCoast is a next-generation software solution for the exploration, mining and comparison of your genome and metagenome projects. Glimmer-MG is a system for finding genes in environmental shotgun DNA sequences.Īnálises metagenômicas (necessita de sequencias anotadas)
CODONCODE ALIGNER MANUAL MANUAL
MEGA is an integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution, inferring ancestral sequences, and testing evolutionary hypotheses. Multiple alignment of nucleic acid and protein sequences
CODONCODE ALIGNER MANUAL CODE
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.Īplicativos Online Aplicativos StandaloneĬodonCode Aligner is an easy-to-use program for sequence assembly, contig editing, and mutation detection.īioinformatics Tools for Sequence Similarity & Analysis Searchingįerramentas on-line de alinhamento e criação de árvores G-language Genome Analysis Environment provides a greater variety of useful genome analysis tools compared to most existing analysis software packages, and is also easily pluggable.